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  "Package": "multimark",
  "Type": "Package",
  "Title": "Capture-Mark-Recapture Analysis using Multiple Non-Invasive\nMarks",
  "Version": "2.1.7",
  "Date": "2025-11-24",
  "Authors@R": "c(person(\"Brett T.\", \"McClintock\", email = \"brett.mcclintock@noaa.gov\",role = c(\"aut\", \"cre\")),person(\"Acho\", \"Arnold\",role = c(\"ctb\",\"cph\"), comment = \"C original matrix library, https://github.com/najela/matrix.h\"),person(\"Barry\", \"Brown\",role = \"ctb\", comment = \"Fortran original ranlib library\"),person(\"James\", \"Lovato\",role = \"ctb\", comment = \"Fortran original ranlib library\"),person(\"John\", \"Burkardt\",role = \"ctb\", comment = \"C original ranlib library, http://people.sc.fsu.edu/~jburkardt/c_src/ranlib\"),person(\"Cleve\", \"Moler\",role = \"ctb\", comment = \"C original linpack library, http://www.kkant.net/geist/ranlib/\"),person(\"Arjun\", \"Gopalaswamy\",role = \"ctb\", comment = \"modified snippets of R package SPACECAP code\"))",
  "Description": "Traditional and spatial capture-mark-recapture analysis\nwith multiple non-invasive marks. The models implemented in\n'multimark' combine encounter history data arising from two\ndifferent non-invasive \"marks\", such as images of left-sided\nand right-sided pelage patterns of bilaterally asymmetrical\nspecies, to estimate abundance and related demographic\nparameters while accounting for imperfect detection. Bayesian\nmodels are specified using simple formulae and fitted using\nMarkov chain Monte Carlo. Addressing deficiencies in currently\navailable software, 'multimark' also provides a user-friendly\ninterface for performing Bayesian multimodel inference using\nnon-spatial or spatial capture-recapture data consisting of a\nsingle conventional mark or multiple non-invasive marks. See\nMcClintock (2015) <doi:10.1002/ece3.1676> and Maronde et al.\n(2020) <doi:10.1002/ece3.6990>.",
  "License": "GPL-2",
  "LazyData": "yes",
  "ByteCompile": "TRUE",
  "RoxygenNote": "7.3.3",
  "Encoding": "UTF-8",
  "Config/pak/sysreqs": "libgdal-dev gdal-bin libgeos-dev libproj-dev\nlibsqlite3-dev",
  "Repository": "https://bmcclintock.r-universe.dev",
  "Date/Publication": "2025-11-25 04:28:49 UTC",
  "RemoteUrl": "https://github.com/bmcclintock/multimark",
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  "Packaged": {
    "Date": "2026-07-05 13:51:01 UTC",
    "User": "root"
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  "Author": "Brett T. McClintock [aut, cre],\nAcho Arnold [ctb, cph] (C original matrix library,\nhttps://github.com/najela/matrix.h),\nBarry Brown [ctb] (Fortran original ranlib library),\nJames Lovato [ctb] (Fortran original ranlib library),\nJohn Burkardt [ctb] (C original ranlib library,\nhttp://people.sc.fsu.edu/~jburkardt/c_src/ranlib),\nCleve Moler [ctb] (C original linpack library,\nhttp://www.kkant.net/geist/ranlib/),\nArjun Gopalaswamy [ctb] (modified snippets of R package SPACECAP code)",
  "Maintainer": "Brett T. McClintock <brett.mcclintock@noaa.gov>",
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  "_created": "2026-07-05T13:51:01.000Z",
  "_published": "2026-07-05T14:00:49.078Z",
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    "getprobsClosedSCR",
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    "markClosedSCR",
    "multimarkCJS",
    "multimarkClosed",
    "multimarkClosedSCR",
    "multimodelCJS",
    "multimodelClosed",
    "multimodelClosedSCR",
    "plotSpatialData",
    "processdata",
    "processdataSCR",
    "simdataCJS",
    "simdataClosed",
    "simdataClosedSCR"
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      "title": "Bobcat data",
      "object": "bobcat",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "occ1",
        "occ2",
        "occ3",
        "occ4",
        "occ5",
        "occ6",
        "occ7",
        "occ8"
      ],
      "rows": 46,
      "table": true,
      "tojson": true
    },
    {
      "name": "bobcatSCR",
      "title": "Bobcat spatial capture-recapture data",
      "object": "bobcatSCR",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "tiger",
      "title": "Tiger data",
      "object": "tiger",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
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    {
      "page": "bobcat",
      "title": "Bobcat data",
      "topics": [
        "bobcat"
      ]
    },
    {
      "page": "bobcatSCR",
      "title": "Bobcat spatial capture-recapture data",
      "topics": [
        "bobcatSCR"
      ]
    },
    {
      "page": "getdensityClosedSCR",
      "title": "Calculate population density estimates",
      "topics": [
        "getdensityClosedSCR"
      ]
    },
    {
      "page": "getprobsCJS",
      "title": "Calculate posterior capture and survival probabilities",
      "topics": [
        "getprobsCJS"
      ]
    },
    {
      "page": "getprobsClosed",
      "title": "Calculate posterior capture and recapture probabilities",
      "topics": [
        "getprobsClosed"
      ]
    },
    {
      "page": "getprobsClosedSCR",
      "title": "Calculate posterior capture and recapture probabilities",
      "topics": [
        "getprobsClosedSCR"
      ]
    },
    {
      "page": "markCJS",
      "title": "Fit open population survival models for ``traditional'' capture-mark-recapture data consisting of a single mark type",
      "topics": [
        "markCJS"
      ]
    },
    {
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      "title": "Fit closed population abundance models for ``traditional'' capture-mark-recapture data consisting of a single mark type",
      "topics": [
        "markClosed"
      ]
    },
    {
      "page": "markClosedSCR",
      "title": "Fit spatial population abundance models for ``traditional'' capture-mark-recapture data consisting of a single mark type",
      "topics": [
        "markClosedSCR"
      ]
    },
    {
      "page": "multimarkCJS",
      "title": "Fit open population survival models for capture-mark-recapture data consisting of multiple non-invasive marks",
      "topics": [
        "multimarkCJS"
      ]
    },
    {
      "page": "multimarkClosed",
      "title": "Fit closed population abundance models for capture-mark-recapture data consisting of multiple non-invasive marks",
      "topics": [
        "multimarkClosed"
      ]
    },
    {
      "page": "multimarkClosedSCR",
      "title": "Fit spatially-explicit population abundance models for capture-mark-recapture data consisting of multiple non-invasive marks",
      "topics": [
        "multimarkClosedSCR"
      ]
    },
    {
      "page": "multimarkSCRsetup-class",
      "title": "Class '\"multimarkSCRsetup\"'",
      "topics": [
        "multimarkSCRsetup-class"
      ]
    },
    {
      "page": "multimarksetup-class",
      "title": "Class '\"multimarksetup\"'",
      "topics": [
        "multimarksetup-class"
      ]
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    {
      "page": "multimodelCJS",
      "title": "Multimodel inference for 'multimark' open population survival models",
      "topics": [
        "multimodelCJS"
      ]
    },
    {
      "page": "multimodelClosed",
      "title": "Multimodel inference for 'multimark' closed population abundance models",
      "topics": [
        "multimodelClosed"
      ]
    },
    {
      "page": "multimodelClosedSCR",
      "title": "Multimodel inference for 'multimark' spatial population abundance models",
      "topics": [
        "multimodelClosedSCR"
      ]
    },
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      "page": "plotSpatialData",
      "title": "Plot spatial capture-mark-recapture data",
      "topics": [
        "plotSpatialData"
      ]
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        "processdata"
      ]
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      ]
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        "simdataClosed"
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      "title": "Simulate spatially-explicit capture-mark-recapture data from a (demographically) closed population with multiple non-invasive marks",
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      ]
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